atom1_type | PAPRECA::PredefinedReaction | protected |
atom2_type | PAPRECA::PredefinedReaction | protected |
bond_dist_sqr | PAPRECA::PredefinedBondForm | protected |
bond_type | PAPRECA::PredefinedReaction | protected |
catalyzing_types | PAPRECA::PredefinedReaction | protected |
delete_atoms | PAPRECA::PredefinedBondForm | protected |
getAtom1Type() const | PAPRECA::PredefinedReaction | |
getAtom2Type() const | PAPRECA::PredefinedReaction | |
getBondDistSqr() const | PAPRECA::PredefinedBondForm | |
getBondType() const | PAPRECA::PredefinedReaction | |
getCatalyzingTypes() const | PAPRECA::PredefinedReaction | |
getRate() const | PAPRECA::PredefinedReaction | |
is_form | PAPRECA::PredefinedReaction | protected |
isDeleteAtoms() const | PAPRECA::PredefinedBondForm | |
isForm() const | PAPRECA::PredefinedReaction | |
isLone() const | PAPRECA::PredefinedBondForm | |
isSameMol() const | PAPRECA::PredefinedBondForm | |
lone_candidates | PAPRECA::PredefinedBondForm | protected |
PredefinedBondForm(const int &atom1_type_in, const int &atom2_type_in, const int &bond_type_in, const double &rate_in, const double &bond_dist_sqr_in, const int &delete_atoms_in, const int &lone_candidates_in, const bool &same_mol_in) | PAPRECA::PredefinedBondForm | |
PredefinedBondForm(const int &atom1_type_in, const int &atom2_type_in, const int &bond_type_in, const double &rate_in, const double &bond_dist_sqr_in, const int &delete_atoms_in, const int &lone_candidates_in, const bool &same_mol_in, const std::vector< int > &catalyzing_types_in) | PAPRECA::PredefinedBondForm | |
PredefinedReaction(const int &atom1_type_in, const int &atom2_type_in, const int &bond_type_in, const double &rate_in) | PAPRECA::PredefinedReaction | |
PredefinedReaction(const int &atom1_type_in, const int &atom2_type_in, const int &bond_type_in, const double &rate_in, const std::vector< int > &catalyzing_types_in) | PAPRECA::PredefinedReaction | |
rate | PAPRECA::PredefinedReaction | protected |
same_mol | PAPRECA::PredefinedBondForm | protected |
~PredefinedBondForm() | PAPRECA::PredefinedBondForm | |
~PredefinedReaction() | PAPRECA::PredefinedReaction | |